STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW2399Conserved hypothetical protein. (128 aa)    
Predicted Functional Partners:
SYNW2400
Short-chain dehydrogenase/reductase (SDR) superfamily.
       0.768
SYNW2401
Ferric uptake regulator family; Poorer E val than the other fur family protein; Belongs to the Fur family.
       0.768
SYNW2402
Conserved hypothetical protein.
       0.768
hli5
Putative high light inducible protein; Has EXXNGXXAMXG motif; Citation: Bhaya et al. (2002) FEMS Microbiol Lett 215:209-219.
       0.768
SYNW2397
Conserved hypothetical protein.
       0.572
SYNW2398
Possible Protein phosphatase 2A regulatory B s.
       0.572
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.469
SYNW2393
Conserved membrane protein, multidrug efflux associated.
       0.438
SYNW2394
Putative multidrug efflux ABC transporter.
       0.438
SYNW2395
Putative multidrug efflux ABC transporter.
       0.438
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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