SYNW2435 protein (Synechococcus sp. WH 8102)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SYNW2435

Putative sucrose phosphorylase. (575 aa)

Predicted Functional Partners:

SYNW2436

0.967

SYNW2434

0.965

SYNW0156

0.929

malQ

0.920

agp,

0.918

pgm

0.908

SYNW1955

0.765

SYNW0235

0.521

SYNW1952

0.512

glsF,

0.502

Your Current Organism:

Synechococcus sp. WH 8102

NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SYNW0156	SYNW0235	SYNW0156	SYNW0235	Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Phosphoglucomutase/phosphomannomutase family protein.	0.617
SYNW0156	SYNW1952	SYNW0156	SYNW1952	Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Putative glycosyl hydrolase family.	0.938
SYNW0156	SYNW1955	SYNW0156	SYNW1955	Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Putative trehalose synthase.	0.971
SYNW0156	SYNW2435	SYNW0156	SYNW2435	Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Putative sucrose phosphorylase.	0.929
SYNW0156	agp,	SYNW0156	SYNW1118	Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	ADP-glucose pyrophosphorylase; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.991
SYNW0156	glsF,	SYNW0156	SYNW2132	Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Ferredoxin-dependent glutamate synthase, Fd-GOGAT.	0.579
SYNW0156	malQ	SYNW0156	SYNW0962	Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Putative 4-alpha-glucanotransferase.	0.991
SYNW0156	pgm	SYNW0156	SYNW2154	Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Phosphoglucomutase.	0.990
SYNW0235	SYNW0156	SYNW0235	SYNW0156	Phosphoglucomutase/phosphomannomutase family protein.	Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.617
SYNW0235	SYNW2435	SYNW0235	SYNW2435	Phosphoglucomutase/phosphomannomutase family protein.	Putative sucrose phosphorylase.	0.521
SYNW0235	agp,	SYNW0235	SYNW1118	Phosphoglucomutase/phosphomannomutase family protein.	ADP-glucose pyrophosphorylase; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.649
SYNW0235	pgm	SYNW0235	SYNW2154	Phosphoglucomutase/phosphomannomutase family protein.	Phosphoglucomutase.	0.411
SYNW1952	SYNW0156	SYNW1952	SYNW0156	Putative glycosyl hydrolase family.	Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.938
SYNW1952	SYNW1955	SYNW1952	SYNW1955	Putative glycosyl hydrolase family.	Putative trehalose synthase.	0.977
SYNW1952	SYNW2435	SYNW1952	SYNW2435	Putative glycosyl hydrolase family.	Putative sucrose phosphorylase.	0.512
SYNW1952	glsF,	SYNW1952	SYNW2132	Putative glycosyl hydrolase family.	Ferredoxin-dependent glutamate synthase, Fd-GOGAT.	0.502
SYNW1952	malQ	SYNW1952	SYNW0962	Putative glycosyl hydrolase family.	Putative 4-alpha-glucanotransferase.	0.991
SYNW1955	SYNW0156	SYNW1955	SYNW0156	Putative trehalose synthase.	Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.971
SYNW1955	SYNW1952	SYNW1955	SYNW1952	Putative trehalose synthase.	Putative glycosyl hydrolase family.	0.977
SYNW1955	SYNW2435	SYNW1955	SYNW2435	Putative trehalose synthase.	Putative sucrose phosphorylase.	0.765