STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_18726Regulator of nonsense transcripts 1. (912 aa)    
Predicted Functional Partners:
UY3_03967
Regulator of nonsense transcripts 2.
   
 0.981
PAQR6
Protein SMG5.
   
 0.969
UY3_02058
RNA-binding protein with serine-rich domain 1.
    
 0.964
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.962
CASC3
Protein CASC3.
    
 0.962
UY3_11349
Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.
    
 
 0.955
UY3_08286
Protein SMG7.
   
 0.947
UY3_07361
Regulator of nonsense transcripts 3B.
    
 0.912
UY3_10792
Regulator of nonsense transcripts 3A.
    
 0.912
UY3_06262
Eukaryotic initiation factor 4A-III.
    
 0.863
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.