STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_17337Nefa_Nip30_N domain-containing protein. (341 aa)    
Predicted Functional Partners:
GSC
Homeobox protein goosecoid.
    
   0.880
XAB2
Pre-mRNA-splicing factor SYF1.
    
   0.649
CDC5L
Cell division cycle 5-like protein.
    
   0.649
UY3_05116
Pre-mRNA-processing-splicing factor 8.
    
   0.649
PSME2
Proteasome activator complex subunit 2.
    
 
 0.604
UY3_00192
FtsJ methyltransferase domain-containing protein 1.
      
 0.599
PRKRIP1
PRKR-interacting protein 1 like protein.
    
 
 0.523
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
   0.520
TIMM22
Mitochondrial import inner membrane translocase subunit Tim22.
    
   0.518
UY3_06262
Eukaryotic initiation factor 4A-III.
   
   0.518
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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