STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_16983tRNA pseudouridine synthase-like 1. (554 aa)    
Predicted Functional Partners:
UY3_18394
DNA-directed RNA polymerases I and III subunit RPAC1.
  
  
 0.721
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
  
  
 0.721
SEC63
Translocation protein SEC63 like protein.
      
 0.703
WDR4
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.695
METTL1
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
 
 0.639
RPUSD1
RNA pseudouridylate synthase domain-containing protein 1.
  
  
 0.615
UY3_10939
Pseudouridylate synthase 7 like protein-like protein.
   
 
 0.609
METTL15
Putative methyltransferase-like protein 15.
   
 
 0.607
UY3_14757
Putative methyltransferase-like protein 15.
   
 
0.607
UY3_00509
Cytoplasmic tRNA 2-thiolation protein 1.
   
 
 0.602
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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