STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SETDB1Histone-lysine N-methyltransferase SETDB1. (778 aa)    
Predicted Functional Partners:
UY3_14925
Histone-lysine N-methyltransferase SETDB1.
 
     0.947
ATF7IP
Activating transcription factor 7-interacting protein 1.
   
 0.891
UY3_01319
Activating transcription factor 7-interacting protein 2.
   
 0.839
ARL14EP
ARF7EP_C domain-containing protein.
    
 
 0.795
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
    
  0.661
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
    
  0.661
UY3_11007
Histone H3.
   
 0.653
UY3_11037
Histone H3.
   
 0.653
UY3_11008
Histone H3; Belongs to the histone H3 family.
   
 0.653
UY3_14192
Histone H3; Belongs to the histone H3 family.
   
 0.653
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.