STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP13Ubiquitin carboxyl-terminal hydrolase. (744 aa)    
Predicted Functional Partners:
UBB
Polyubiquitin-C.
    
 0.897
TACSTD2
Histone H2A deubiquitinase MYSM1.
   
 
 0.801
UY3_02438
Ubiquitin fusion degradation protein 1 like protein.
    
 0.772
UY3_06567
Ubiquitin carboxyl-terminal hydrolase 10; Belongs to the peptidase C19 family.
     
 0.767
UY3_15902
AN1-type zinc finger and ubiquitin domain-containing protein 1.
    
 0.710
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.707
UY3_16131
Polyubiquitin.
    
 0.707
UY3_11253
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.707
UY3_02426
Ubiquitin-like protein 4A.
    
 0.707
UY3_11075
S-phase kinase-associated protein 2.
    
 0.661
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.