STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_07293Voltage-dependent T-type calcium channel subunit alpha-1H. (695 aa)    
Predicted Functional Partners:
CACNA1I
Voltage-dependent T-type calcium channel subunit alpha-1I.
 
   
  0.908
RASGRP3
Ras guanyl-releasing protein 3.
     
  0.900
RASGRF2
Ras-specific guanine nucleotide-releasing factor 2.
     
  0.900
UY3_10501
Voltage-dependent L-type calcium channel subunit alpha-1S.
 
0.754
CATSPERB
Cation channel sperm-associated protein subunit beta.
    
 0.660
UY3_04025
Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.
 
0.552
CACNA1E
Voltage-dependent R-type calcium channel subunit alpha-1E.
  
0.527
IL17RA
Voltage-dependent L-type calcium channel subunit alpha-1C.
   
0.482
UY3_14500
Putative voltage-dependent N-type calcium channel subunit alpha-1B.
   
0.482
UY3_08305
Voltage-dependent R-type calcium channel subunit alpha-1E.
   
 0.482
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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