STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0020100Histone H2B; Belongs to the histone H2B family. (126 aa)    
Predicted Functional Partners:
LEO1
RNA polymerase-associated protein LEO1.
    
 0.832
HIST1H2A3
Histone H2A; Belongs to the histone H2A family.
 
 0.751
Y1Q_0020082
Histone H2A; Belongs to the histone H2A family.
 
 0.749
Y1Q_0020102
Histone H2A; Belongs to the histone H2A family.
 
 0.747
GLYR1
Putative oxidoreductase GLYR1.
    
   0.739
CTR9
RNA polymerase-associated CTR9-like protein.
 
 
 0.736
KDM6B-2
Uncharacterized protein.
    
 0.733
KDM6B
Lysine-specific demethylase 6B isoform A.
    
 0.733
Y1Q_0013172
Histone domain-containing protein.
 
 
 0.723
Y1Q_0023709
Histone H2A; Belongs to the histone H2A family.
 
 0.719
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.