STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMNALamin-L(III)-like; Belongs to the intermediate filament family. (625 aa)    
Predicted Functional Partners:
BANF2-1
Barrier-to-autointegration factor-like protein isoform A.
   
 0.640
BANF1
Barrier-to-autointegration factor isoform B.
   
 0.640
LEMD3
Inner nuclear membrane protein Man1 isoform B.
    
 0.603
MYBPC3
Uncharacterized protein.
    
 0.602
MYH6
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
     
 0.526
PTRF
Polymerase I and transcript release factor.
   
  
 0.464
MLH1
DNA mismatch repair protein Mlh1.
    
 
 0.462
SPTA1
Spectrin alpha chain, erythrocytic 1 isoform B.
    
 
 0.435
PRKCG
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
   
 0.425
BSCL2
Seipin.
      
 0.414
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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