STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HEMK1HemK methyltransferase family member 1. (349 aa)    
Predicted Functional Partners:
TRMT112
Multifunctional methyltransferase subunit TRM112-like protein.
    
 0.951
MTRF1
Peptide chain release factor 1, mitochondrial.
  
 
 0.846
NAMPT
Nicotinamide phosphoribosyltransferase; Belongs to the NAPRTase family.
  
 
 0.846
CUNH12orf65
RF_PROK_I domain-containing protein.
  
 
 0.846
FECH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
    
 0.844
CPOX
Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial.
   
 
 0.842
ETF1
Eukaryotic peptide chain release factor subunit 1.
    
 0.785
N6AMT1
HemK methyltransferase family member 2.
      
 0.693
GAMT
Guanidinoacetate N-methyltransferase.
    
 
 0.598
GART-2
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
  
  
 0.571
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.