STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX13Sorting nexin-13. (948 aa)    
Predicted Functional Partners:
ANKMY2
Ankyrin repeat and MYND domain-containing protein 2.
    
 
 0.796
BZW1
Basic leucine zipper and W2 domain-containing protein 1.
      
 0.767
TSPAN13
Tetraspanin-13; Belongs to the tetraspanin (TM4SF) family.
    
 
 0.726
SNX14
Sorting nexin-14 isoform A.
   
 
0.688
PCED1A
PC-esterase domain-containing protein 1A.
      
 0.562
SNX17
Sorting nexin-17 isoform B.
      
 0.541
STARD3
StAR-related lipid transfer protein 3.
      
 0.540
SNX3
Sorting nexin-3.
      
 0.469
SNX27
Sorting nexin-27 isoform A.
   
  
 0.467
ANKRD46
Ankyrin repeat domain-containing protein 46.
    
 
 0.427
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.