STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0009972Reverse transcriptase domain-containing protein. (409 aa)    
Predicted Functional Partners:
Y1Q_0024278
Integrase catalytic domain-containing protein.
 
     0.704
Y1Q_0010070
Integrase catalytic domain-containing protein.
 
     0.700
Y1Q_0019953
Helicase ATP-binding domain-containing protein.
    
 0.575
FANCM-1
Fanconi anemia group M protein isoform B.
    
 0.575
Y1Q_0015695
Integrase catalytic domain-containing protein.
 
     0.534
Y1Q_0002548
Reverse transcriptase domain-containing protein.
  
     0.494
Y1Q_0014168
Integrase catalytic domain-containing protein.
 
     0.461
Y1Q_0009672
Reverse transcriptase domain-containing protein.
  
     0.440
Y1Q_0015703
Integrase catalytic domain-containing protein.
 
     0.412
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.