STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGALS9LGalectin. (320 aa)    
Predicted Functional Partners:
POFUT1
GDP-fucose protein O-fucosyltransferase 1.
      
 0.554
HS6ST1-2
Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.
      
 0.554
HPD
4-hydroxyphenylpyruvate dioxygenase.
      
 0.540
GTF2B
Transcription initiation factor IIB.
      
 0.539
FUT2
L-Fucosyltransferase; Belongs to the glycosyltransferase 11 family.
      
 0.498
PHGDH
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
      
 0.497
ST6GAL1
Beta-galactoside alpha-2,6-sialyltransferase 1; Belongs to the glycosyltransferase 29 family.
      
 0.489
LMAN1
Protein ERGIC-53.
      
 0.489
NDST3
Uncharacterized protein.
      
 0.489
ST8SIA2
Alpha-2,8-sialyltransferase 8B; Belongs to the glycosyltransferase 29 family.
   
  
 0.469
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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