STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBXN6UBX domain-containing protein 6. (439 aa)    
Predicted Functional Partners:
UBXN4
UBX domain-containing protein 4.
    
 0.994
VCP
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 0.994
UBXN7
UBX domain-containing protein 7.
    
 
 0.993
NSFL1C
NSFL1 cofactor p47.
    
 0.992
UBXN1
UBX domain-containing protein 1.
   
 0.976
UBXN2A
UBX domain-containing protein 2A.
    
 0.975
ASPSCR1
Tether containing UBX domain for GLUT4 isoform A.
   
 
0.923
FAF1
FAS-associated factor 1.
    
 
 0.919
SVIP
Small VCP/p97-interacting protein.
    
 0.908
UBXN2B
UBX domain-containing protein 2B.
    
 
 0.853
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.