STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF112LRING finger protein 112. (527 aa)    
Predicted Functional Partners:
REEP3
Receptor expression-enhancing protein.
    
 
 0.694
REEP1
Receptor expression-enhancing protein.
    
 
 0.627
B9D1
B9 domain-containing protein 1.
      
 0.572
SPAST
Spastin; Belongs to the AAA ATPase family.
   
 
 0.542
PPDPF
Pancreatic progenitor cell differentiation and proliferation factor isoform A.
      
 0.540
WWTR1
WW domain-containing transcription regulator protein 1.
    
 0.501
REEP2
Receptor expression-enhancing protein.
    
 
 0.471
RAB3GAP1
Rab3 GTPase-activating protein catalytic subunit.
    
 
 0.460
RAB3GAP2
Rab3 GTPase-activating protein non-catalytic subunit isoform C.
      
 0.459
EDC3
Enhancer of mRNA-decapping protein 3.
      
 0.416
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.