STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQCKIQ domain-containing protein K. (257 aa)    
Predicted Functional Partners:
SNX9
Sorting nexin.
      
 0.575
CCDC150
Coiled-coil domain-containing protein 150 isoform A.
      
 0.562
DIRC2
Disrupted in renal carcinoma protein 2.
      
 0.551
EFCAB11-1
EF-hand calcium-binding domain-containing protein 11 isoform A.
      
 0.499
FAM181A
Protein FAM181A.
      
 0.447
IDH1-2
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
      
 0.418
IDH1
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
      
 0.418
LRRC43-1
Leucine-rich repeat-containing protein 43 isoform B.
      
 0.406
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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