STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKHD1Ankyrin repeat and KH domain-containing protein 1 isoform B. (1989 aa)    
Predicted Functional Partners:
USP34
Ubiquitin carboxyl-terminal hydrolase 34 isoform A; Belongs to the peptidase C19 family.
   
 0.723
PRRC2C
Flavin-containing monooxygenase.
   
 
 0.704
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform B.
   
 0.682
EIF4EBP3
Eukaryotic translation initiation factor 4E-binding protein 3.
    
 
 0.557
CBARP
Protein Dos.
      
 0.539
NUDC-1
Nuclear migration protein nudC isoform A.
     
 0.490
SEC24B
Uncharacterized protein.
   
 0.483
CLRN3
Clarin-3.
    
 0.470
RND2
Rho-related GTP-binding protein RhoN.
    
  0.453
PRRC2A
Protein PRRC2A.
   
 
 0.452
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.