Y1Q_0016788 protein (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Y1Q_0016788

Ig-like domain-containing protein; Belongs to the MHC class I family. (337 aa)

Predicted Functional Partners:

B2M

0.703

RPA2

0.703

Y1Q_0021296

0.648

CD8A

0.648

TAPBP

0.597

CALR

0.522

CD3E

0.498

CD247

0.496

SASS6

0.481

SASS6L

0.481

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B2M	CALR	A0A151MAE5	A0A151MMG3	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Calreticulin.	0.749
B2M	CD247	A0A151MAE5	A0A151MDK3	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	T-cell surface glycoprotein CD3 zeta chain.	0.663
B2M	CD3E	A0A151MAE5	A0A151PGJ4	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	T-cell surface glycoprotein CD3 epsilon chain.	0.616
B2M	CD8A	A0A151MAE5	A0A151P9K6	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	T-cell surface glycoprotein CD8 alpha chain.	0.786
B2M	TAPBP	A0A151MAE5	A0A151N8M3	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Tapasin.	0.834
B2M	Y1Q_0016788	A0A151MAE5	A0A151NB89	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.703
B2M	Y1Q_0021296	A0A151MAE5	A0A151P9F4	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Uncharacterized protein.	0.786
CALR	B2M	A0A151MMG3	A0A151MAE5	Calreticulin.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	0.749
CALR	RPA2	A0A151MMG3	A0A151PHA4	Calreticulin.	Replication protein A subunit.	0.692
CALR	SASS6	A0A151MMG3	A0A151M4T9	Calreticulin.	Spindle assembly abnormal 6-like protein isoform B.	0.532
CALR	SASS6L	A0A151MMG3	A0A151M836	Calreticulin.	Spindle assembly abnormal 6-like protein isoform A.	0.532
CALR	TAPBP	A0A151MMG3	A0A151N8M3	Calreticulin.	Tapasin.	0.997
CALR	Y1Q_0016788	A0A151MMG3	A0A151NB89	Calreticulin.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.522
CD247	B2M	A0A151MDK3	A0A151MAE5	T-cell surface glycoprotein CD3 zeta chain.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	0.663
CD247	CD3E	A0A151MDK3	A0A151PGJ4	T-cell surface glycoprotein CD3 zeta chain.	T-cell surface glycoprotein CD3 epsilon chain.	0.992
CD247	CD8A	A0A151MDK3	A0A151P9K6	T-cell surface glycoprotein CD3 zeta chain.	T-cell surface glycoprotein CD8 alpha chain.	0.864
CD247	RPA2	A0A151MDK3	A0A151PHA4	T-cell surface glycoprotein CD3 zeta chain.	Replication protein A subunit.	0.663
CD247	SASS6	A0A151MDK3	A0A151M4T9	T-cell surface glycoprotein CD3 zeta chain.	Spindle assembly abnormal 6-like protein isoform B.	0.508
CD247	SASS6L	A0A151MDK3	A0A151M836	T-cell surface glycoprotein CD3 zeta chain.	Spindle assembly abnormal 6-like protein isoform A.	0.508
CD247	Y1Q_0016788	A0A151MDK3	A0A151NB89	T-cell surface glycoprotein CD3 zeta chain.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.496