STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0017199WW domain-containing protein. (265 aa)    
Predicted Functional Partners:
APBB1
Amyloid beta A4 protein-binding family B member 1.
 
      0.900
APBB2
Amyloid beta A4 protein-binding family B member 2.
 
      0.899
DDX46
Putative ATP-dependent RNA helicase DDX46.
   
 0.886
SF3B1
Splicing factor 3B subunit 1.
    
 
 0.871
SF3A2
Splicing factor 3A subunit 2.
   
 
 0.829
CRNKL1
Crooked neck-like protein 1.
   
 
 0.801
SF3B2
Splicing factor 3B subunit 2.
   
 
 0.775
SF1
Splicing factor 1 isoform B.
     
 0.726
SF3A1
Splicing factor 3A subunit 1.
    
 
 0.720
SF3B4
Splicing factor 3B subunit 4.
    
 
 0.719
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.