STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMGN2Non-histone chromosomal protein HMG-17. (72 aa)    
Predicted Functional Partners:
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.996
RPL13A
60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
  
 0.982
RPL26L1
60S ribosomal protein L26-like 1.
  
 0.981
RPL11-1
60S ribosomal protein L11 isoform A; Belongs to the universal ribosomal protein uL5 family.
  
 0.981
RPL19
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.981
RPL30
60S ribosomal protein L30.
   
 0.980
RPL6
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
   
 0.980
RPL5
60S ribosomal protein L5.
  
 0.979
RPL8
60S ribosomal protein L8.
  
 0.979
RPL31
60S ribosomal protein L31.
  
 0.979
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.