STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NUCB1Nucleobindin-1. (461 aa)    
Predicted Functional Partners:
RCN1
Reticulocalbin-1.
   
 
 0.655
PIK3C2G-2
Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit gamma; Belongs to the PI3/PI4-kinase family.
      
 0.572
FAM20C-2
Fam20C domain-containing protein.
    
 0.543
SURF4
Surfeit locus protein 4.
   
  
 0.541
PIK3C2B
Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta isoform B; Belongs to the PI3/PI4-kinase family.
      
 0.537
PLEKHA5
Pleckstrin-like proteiny domain-containing family A member 5 isoform A.
      
 0.529
PLEKHA4
Pleckstrin-like proteiny domain-containing family A member 4.
      
 0.499
ALX4
Homeobox protein aristaless-like 4.
      
 0.469
KCNJ11-2
Uncharacterized protein.
      
 0.469
KCNJ11
ATP-sensitive inward rectifier potassium channel 11.
      
 0.469
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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