STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PALD1Paladin isoform B. (857 aa)    
Predicted Functional Partners:
ZNF646
Zinc finger protein 646.
      
 0.858
CHST8
Carbohydrate sulfotransferase.
      
 0.761
ADAMTS14-2
Uncharacterized protein.
 
    
 0.759
ADAMTS14
A disintegrin and metalloproteinase with thrombospondin motifs 14.
      
 0.758
PARP2
Poly [ADP-ribose] polymerase.
      
 0.718
DEPDC4
DEP domain-containing protein 4.
      
 0.712
TCP11
T-complex 11-like protein.
      
 0.712
STX4
Syntaxin-4; Belongs to the syntaxin family.
      
 0.682
ACBD4
Acyl-CoA-binding domain-containing protein 4.
      
 0.595
STX1B
Syntaxin-1B; Belongs to the syntaxin family.
      
 0.580
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.