STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTA1Metastasis-associated protein MTA1. (590 aa)    
Predicted Functional Partners:
RBBP4-2
WD_REPEATS_REGION domain-containing protein.
   
 0.814
RBBP4
Histone-binding protein RBBP4.
   
 0.814
MBD2
Methyl-CpG-binding domain protein 2.
   
 0.791
MBD3
Methyl-CpG-binding domain protein 3.
   
 0.791
WDR73-1
WD repeat-containing protein 73 isoform A.
   
 0.772
GATAD2B
Transcriptional repressor p66-beta isoform B.
   
 0.761
MBD4
Methyl-CpG-binding domain protein 4.
   
 0.758
GATAD2A
Transcriptional repressor p66-alpha isoform C.
   
 0.718
HDAC2
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.714
HDAC1
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.714
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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