STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KLHL10Kelch-like protein 10. (591 aa)    
Predicted Functional Partners:
CUL3
Cullin-3; Belongs to the cullin family.
    
 0.780
SQSTM1
Sequestosome-1.
    
 0.647
BBS1-1
Bardet-Biedl syndrome 1 protein isoform A.
    
 0.647
BBS9
Protein PTHB1 isoform B.
    
 0.639
TTC8
Tetratricopeptide repeat protein 8.
    
 0.591
RBX1
E3 ubiquitin-protein ligase RBX1.
    
 0.590
BBS7
Bardet-Biedl syndrome 7 protein.
   
 0.577
IQCF5
IQ domain-containing protein F5.
      
 0.558
CUL1
Cullin-1; Belongs to the cullin family.
    
 0.558
PSMD13
26S proteasome non-ATPase regulatory subunit 13.
     
 0.517
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.