STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA3Carbonic anhydrase 3; Belongs to the alpha-carbonic anhydrase family. (271 aa)    
Predicted Functional Partners:
ABCC4
Uncharacterized protein.
   
  
 0.593
RPF2
Ribosome production factor 2-like protein.
   
 
 0.560
RPL5
60S ribosomal protein L5.
    
 
 0.558
RRS1
Ribosome biogenesis regulatory protein-like protein.
   
 
 0.468
GRWD1
Glutamate-rich WD repeat-containing protein 1.
   
  
 0.460
CA7
Carbonic anhydrase 7; Belongs to the alpha-carbonic anhydrase family.
  
  
0.460
RPL11-1
60S ribosomal protein L11 isoform A; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.455
NLE1
Notchless protein-like protein 1 isoform A.
   
  
 0.402
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.