STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC127Coiled-coil domain-containing protein 127. (296 aa)    
Predicted Functional Partners:
SUPT7L
STAGA complex 65 subunit gamma.
   
  
 0.668
FAM104A
Protein FAM104A.
      
 0.616
MTO1
MTO1-like protein, mitochondrial.
      
 0.567
TADA2B
Transcriptional adapter.
      
 0.546
ASB7
Ankyrin repeat and SOCS box protein 7.
      
 0.542
CNOT10
CCR4-NOT transcription complex subunit 10.
      
 0.540
AARS
AA_TRNA_LIGASE_II_ALA domain-containing protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
      
 0.538
Y1Q_0023131
Uncharacterized protein.
      
 0.483
CFAP61
Cilia-and flagella-associated protein 61.
      
 0.469
Y1Q_0000370
Uncharacterized protein.
      
 0.465
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.