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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgdA_1peptidoglycan-N-acetylglucosamine deacetylase. (269 aa)    
Predicted Functional Partners:
pdaA
peptidoglycan-N-acetylmuramic acid deacetylase PdaA precursor.
  
     0.735
pgdA_3
peptidoglycan-N-acetylglucosamine deacetylase.
  
     0.532
T45_06173
Endoglucanase E1 precursor.
    
 0.527
engD
Endoglucanase D precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.527
bbsF_1
succinyl-CoA:(R-benzylsuccinate CoA-transferase; Belongs to the CoA-transferase III family.
       0.517
T45_01043
Citrate synthase.
       0.517
pytH
Pyrethroid hydrolase.
       0.517
chtA
Chitinase 63 precursor; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.511
icaA
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
 
 
0.457
pgaC_1
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
 
 
0.451
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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