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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_02168Putative HTH-type transcriptional. (1048 aa)    
Predicted Functional Partners:
T45_02270
Saccharopine dehydrogenase.
  
    0.595
T45_06364
SnoaL-like domain protein.
  
     0.510
T45_06362
SnoaL-like domain protein.
  
     0.503
embR_1
Transcriptional regulatory protein EmbR.
 
  
 0.483
T45_00456
Major Facilitator Superfamily protein.
  
     0.469
choS
Cholesterol oxidase, substrate-binding.
  
     0.454
embR_2
Transcriptional regulatory protein EmbR.
 
  
 0.451
T45_00193
Hypothetical protein.
  
     0.432
T45_08270
DNA-binding transcriptional repressor MarR.
  
    0.421
T45_03123
Hypothetical protein.
  
    0.402
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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