STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degU_6Transcriptional regulatory protein DegU. (257 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase.
   
 0.992
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
   
 0.918
liaS_10
Sensor histidine kinase LiaS.
 
  0.876
T45_09072
Sensory histidine kinase AtoS.
 
 0.870
desK_11
Sensor histidine kinase DesK.
  
  0.810
liaS_6
Sensor histidine kinase LiaS.
  
  0.806
liaS_5
Sensor histidine kinase LiaS.
  
  0.804
liaS_3
Sensor histidine kinase LiaS.
  
  0.803
narX_2
Nitrate/nitrite sensor protein NarX.
  
  0.794
desK_8
Sensor histidine kinase DesK.
  
  0.790
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.