STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rppHRNA pyrophosphohydrolase. (166 aa)    
Predicted Functional Partners:
lig
Putative DNA ligase-like protein/MT0965; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
     0.905
gabD1
Succinate-semialdehyde dehydrogenase [NADP(+)].
       0.781
T45_03085
Hypothetical protein.
       0.759
trxB_2
Thioredoxin reductase.
       0.550
puuR_2
HTH-type transcriptional regulator PuuR.
       0.550
qorA_1
Quinone oxidoreductase 1.
       0.550
T45_03089
Hypothetical protein.
       0.509
ykoU_2
Putative ATP-dependent DNA ligase YkoU.
  
     0.443
ykoU_1
Putative ATP-dependent DNA ligase YkoU.
 
     0.425
T45_05657
Putative DNA ligase-like protein/MT0965.
 
     0.415
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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