V4SPI5_9ROSI protein (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4SPI5_9ROSI

Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (694 aa)

Predicted Functional Partners:

V4UD29_9ROSI

0.615

V4VKE2_9ROSI

0.568

V4S6B7_9ROSI

0.543

V4U4W7_9ROSI

0.526

V4ULM1_9ROSI

0.513

V4SWV4_9ROSI

0.512

V4TEI9_9ROSI

0.509

V4U5V0_9ROSI

0.508

V4SY67_9ROSI

0.505

V4SDR5_9ROSI

0.504

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4S6B7_9ROSI	V4SDR5_9ROSI	V4S6B7	V4SDR5	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	Methyltransferase.	0.461
V4S6B7_9ROSI	V4SPI5_9ROSI	V4S6B7	V4SPI5	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.543
V4S6B7_9ROSI	V4SWV4_9ROSI	V4S6B7	V4SWV4	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	Methyltransferase.	0.474
V4S6B7_9ROSI	V4SY67_9ROSI	V4S6B7	V4SY67	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	Methyltransferase.	0.421
V4S6B7_9ROSI	V4TEI9_9ROSI	V4S6B7	V4TEI9	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	Methyltransferase.	0.454
V4S6B7_9ROSI	V4U4W7_9ROSI	V4S6B7	V4U4W7	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	OBERON-like protein; Probable transcription factor.	0.504
V4S6B7_9ROSI	V4ULM1_9ROSI	V4S6B7	V4ULM1	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	Methyltransferase.	0.426
V4SDR5_9ROSI	V4S6B7_9ROSI	V4SDR5	V4S6B7	Methyltransferase.	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.461
V4SDR5_9ROSI	V4SPI5_9ROSI	V4SDR5	V4SPI5	Methyltransferase.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.504
V4SDR5_9ROSI	V4TEI9_9ROSI	V4SDR5	V4TEI9	Methyltransferase.	Methyltransferase.	0.563
V4SDR5_9ROSI	V4U4W7_9ROSI	V4SDR5	V4U4W7	Methyltransferase.	OBERON-like protein; Probable transcription factor.	0.535
V4SDR5_9ROSI	V4U5V0_9ROSI	V4SDR5	V4U5V0	Methyltransferase.	MADS-box domain-containing protein.	0.540
V4SDR5_9ROSI	V4UD29_9ROSI	V4SDR5	V4UD29	Methyltransferase.	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.515
V4SPI5_9ROSI	V4S6B7_9ROSI	V4SPI5	V4S6B7	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.543
V4SPI5_9ROSI	V4SDR5_9ROSI	V4SPI5	V4SDR5	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.504
V4SPI5_9ROSI	V4SWV4_9ROSI	V4SPI5	V4SWV4	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.512
V4SPI5_9ROSI	V4SY67_9ROSI	V4SPI5	V4SY67	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.505
V4SPI5_9ROSI	V4TEI9_9ROSI	V4SPI5	V4TEI9	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.509
V4SPI5_9ROSI	V4U4W7_9ROSI	V4SPI5	V4U4W7	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	OBERON-like protein; Probable transcription factor.	0.526
V4SPI5_9ROSI	V4U5V0_9ROSI	V4SPI5	V4U5V0	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	MADS-box domain-containing protein.	0.508

page 1 of 4

Server load: low (26%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Textmining

Neighborhood

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About