STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAAU_0619Stage V sporulation protein B. (509 aa)    
Predicted Functional Partners:
CAAU_2551
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase; Belongs to the UPF0297 family.
  
     0.715
CAAU_0618
Possible tetrapyrrole methyltransferase domain / Nucleoside triphosphate pyrophosphohydrolase MazG.
 
    0.712
CAAU_2449
RNA polymerase sporulation specific sigma factor SigH; Belongs to the sigma-70 factor family.
  
    0.671
CAAU_0620
Stage V sporulation protein T, AbrB family transcriptional regulator (SpoVT).
     
 0.623
CAAU_2112
Firmicutes ribosomal L7Ae family protein.
  
    0.520
CAAU_0616
Nucleoside triphosphate pyrophosphohydrolase MazG.
  
    0.504
CAAU_0617
Nucleoside triphosphate pyrophosphohydrolase MazG.
  
    0.504
CAAU_0885
Central glycolytic genes regulator.
  
    0.472
codY
GTP-sensing transcriptional pleiotropic repressor codY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.
  
     0.460
CAAU_1046
Putative tRNA-m1A22 methylase.
  
     0.458
Your Current Organism:
Caloramator australicus
NCBI taxonomy Id: 857293
Other names: C. australicus RC3, Caloramator australicus KCTC 5601, Caloramator australicus RC3, Caloramator australicus str. RC3, Caloramator australicus strain RC3, Caloramator sp. KCTC 5601
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