STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0130Putative membrane protein; Predicted metal-dependent membrane protease. (267 aa)    
Predicted Functional Partners:
CVAR_2639
Predicted membrane protein.
 
     0.747
CVAR_2048
Predicted membrane protein.
 
     0.733
CVAR_0263
Hypothetical protein.
  
     0.687
CVAR_2562
Predicted membrane protein.
 
     0.669
CVAR_0261
Predicted integral membrane protein.
 
     0.653
CVAR_1610
Putative membrane protein.
  
     0.651
CVAR_1656
Predicted membrane protein.
  
    0.620
aftC
Arabinofuranosyltransferase C.
  
     0.609
CVAR_2038
Hypothetical protein.
  
     0.565
CVAR_2155
Putative membrane protein.
  
     0.563
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.