STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkBAlkane 1-monooxygenase. (430 aa)    
Predicted Functional Partners:
rubA
High molecular weight rubredoxin.
 
  
 0.975
adhA1
Zn-dependent alcohol dehydrogenases.
     
 0.910
adhA2
Zn-dependent alcohol dehydrogenases.
     
 0.910
CVAR_0341
Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
     
  0.900
CVAR_0138
Hypothetical protein.
       0.832
rubB
High molecular weight rubredoxin.
 
  
 0.711
CVAR_2721
Hypothetical protein; Fatty acid desaturase.
  
     0.702
CVAR_0135
ferredoxin-NAD+ reductase; Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
   
 0.672
fas
Fatty acid synthase; Enoyl reductase domain of yeast-type FAS1.
 
  
 0.623
CVAR_2720
Hypothetical protein; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  
 0.623
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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