STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
siuR5AraC-family transcription regulator of iron proteins; AraC-type DNA-binding domain-containing proteins. (209 aa)    
Predicted Functional Partners:
siuU1
Sideophore-iron utilization protein; Siderophore-interacting protein.
 
  
 0.827
siuR4
AraC-family transcription regulator of iron proteins; AraC-type DNA-binding domain-containing proteins.
 
  
0.683
siuS12
Iron-siderophore binding protein; ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
   0.675
siuU2
Sideophore-iron utilization protein; Siderophore-interacting protein.
 
  
 0.642
sigA
RNA polymerase sigma factor A; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.604
sigB
RNA polymerase sigma factor B; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.604
siiE
Siderophore-interacting protein; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  
 0.595
siiA
Siderophore-interacting protein.
  
  
 0.584
CVAR_0342
Hypothetical protein; Rhodanese-related sulfurtransferase.
  
  
 0.569
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.556
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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