STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0315Protein-tyrosine phosphatase; Glycine/serine hydroxymethyltransferase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (182 aa)    
Predicted Functional Partners:
CVAR_0426
Protein tyrosine/serine phosphatase.
     
 0.906
CVAR_0310
Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 
0.904
CVAR_0314
Putative secreted protein.
       0.785
CVAR_0320
Putative protein-tyrosine kinase; Capsular polysaccharide biosynthesis protein.
 
 
 0.611
CVAR_0268
Thioredoxin domain-containing protein.
  
 
 0.598
CVAR_1820
Thioredoxin domain-containing protein.
  
 
 0.598
trxA
Thioredoxin; Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
  
 
 0.598
ybeY
Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
   0.563
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
   0.553
phr
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
    
   0.543
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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