STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0438Hypothetical protein; Restriction endonuclease. (410 aa)    
Predicted Functional Partners:
CVAR_0439
Uncharacterized low-complexity proteins.
     
 0.701
CVAR_0440
Hypothetical protein; Lactoylglutathione lyase and related lyases.
       0.568
purT
Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.
       0.448
CVAR_1727
Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.416
CVAR_2717
Uncharacterized protein conserved in bacteria.
 
     0.416
CVAR_0775
Putative secreted protein; Ni,Fe-hydrogenase I cytochrome b subunit.
  
     0.409
CVAR_0677
Hypothetical protein; Superfamily I DNA and RNA helicases and helicase subunits.
 
     0.407
CVAR_1042
Uncharacterized protein conserved in bacteria.
  
     0.400
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.