STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0513Fumarylacetoacetate hydrolase family protein; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene- 1,7-dioic acid hydratase (catechol pathway). (288 aa)    
Predicted Functional Partners:
fum
Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
 0.848
sdhA
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
 
 0.834
sdhB
Succinate dehydrogenase/fumarate reductase, Fe- S protein subunit.
  
 
  0.814
CVAR_2763
Succinate dehydrogenase subunit.
    
  0.806
cysS
Cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.683
thiX
Thiamine biosynthesis protein.
       0.599
putA
NAD-dependent aldehyde dehydrogenases.
  
 
 0.519
ligD
DNA ligase; Predicted eukaryotic-type DNA primase.
  
  
 0.474
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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