STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0622Resuscitation-promoting factor. (203 aa)    
Predicted Functional Partners:
CVAR_2188
Hypothetical protein.
 
     0.647
CVAR_0016
Putative membrane protein.
   
    0.619
mshD
MshD acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
 
   
 0.619
cwlM
Putative hydrolase; N-acetylmuramoyl-L-alanine amidase.
 
  
 0.596
CVAR_1471
Putative membrane protein; ABC-type multidrug transport system, permease component.
 
     0.549
CVAR_2584
Hypothetical protein; Multimeric flavodoxin WrbA.
   
  
 0.522
dps
DNA protection during starvation protein; DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
   
  
 0.486
otsB
Trehalose-6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
  
 0.484
CVAR_0809
Hypothetical protein; Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis.
  
     0.478
CVAR_0434
Predicted redox protein, regulator of disulfide bond formation.
   
  
 0.473
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.