STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_0761AraC-family transcription regulator of iron proteins; AraC-type DNA-binding domain-containing proteins. (528 aa)    
Predicted Functional Partners:
siuS6
Iron-siderophore binding protein; ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
    0.567
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.549
CVAR_2434
ThiJ/PfpI domain protein; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
 
 0.451
fiuR1
AraC DNA-binding transcription regulator.
 
  
0.443
siuR3
AraC-family transcription regulator of iron proteins; AraC-type DNA-binding domain-containing proteins.
 
  
0.439
siuR1
AraC-family transcription regulator of iron proteins; AraC-type DNA-binding domain-containing proteins.
 
  
0.433
siuR2
AraC-family transcription regulator of iron proteins; AraC-type DNA-binding domain-containing proteins.
 
  
0.426
siuR5
AraC-family transcription regulator of iron proteins; AraC-type DNA-binding domain-containing proteins.
 
  
0.419
fiuR2
AraC-family transcription regulator of iron proteins; AraC-type DNA-binding domain-containing proteins.
 
  
0.414
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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