STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaHProtocatechuate 3,4-dioxygenase beta subunit. (102 aa)    
Predicted Functional Partners:
pcaL
3-oxoadipate enol-lactonase; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
   
 0.750
pcaD
3-oxoadipate enol-lactonase; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
   
 0.649
CVAR_0898
Transcriptional regulator.
  
     0.600
vanA
Vanillate monooxygenase; Phenylpropionate dioxygenase and related ring- hydroxylating dioxygenases, large terminal subunit.
 
  
 0.553
CVAR_1527
Putative membrane protein; Predicted membrane-bound metal-dependent hydrolases.
 
     0.501
clpP1
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.448
clpP2
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.448
sdhB
Succinate dehydrogenase/fumarate reductase, Fe- S protein subunit.
   
    0.439
CVAR_1976
Chlorocatechol 1,2-dioxygenase; Protocatechuate 3,4-dioxygenase beta subunit.
  
  
 0.406
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.