STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1260Putative membrane protein; Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (553 aa)    
Predicted Functional Partners:
CVAR_1261
Hypothetical protein.
 
     0.943
putA
NAD-dependent aldehyde dehydrogenases.
  
  
 0.928
CVAR_1259
Hypothetical protein; Galactose mutarotase and related enzymes.
 
     0.748
CVAR_1262
UDP-glucose-hexose-1- phosphateuridylyltransferase; Galactose-1-phosphate uridylyltransferase.
 
     0.683
CVAR_1263
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
     0.619
CVAR_1540
Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins.
   
  
 0.506
CVAR_2188
Hypothetical protein.
  
  
 0.506
CVAR_1220
Hypothetical protein; ABC-type polar amino acid transport system, ATPase component.
  
  
 0.477
gluA
ABC-type polar amino acid transport system, ATPase component.
  
  
 0.477
tyrS
Tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
       0.475
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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