STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1620ABC-type sugar transport systems, ATPase components. (228 aa)    
Predicted Functional Partners:
bioN
ABC-type cobalt transport system, permease component CbiQ and related transporters.
 
 0.999
bioY
BioY family protein.
 
 
 0.998
CVAR_0433
Putative membrane protein; ABC-type cobalt transport system, permease component CbiQ and related transporters.
  
 
 0.871
CVAR_0435
Hypothetical protein; ABC-type sugar transport systems, ATPase components.
 
 
 0.732
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.698
CVAR_1357
Hypothetical protein; ABC-type sugar transport systems, ATPase components.
  
    0.686
CVAR_1618
Hypothetical protein.
       0.650
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.556
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
    0.531
CVAR_2669
ABC-type spermidine/putrescine transport system, permease component II.
   
    0.467
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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