STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_1818Hypothetical protein; NTP pyrophosphohydrolases including oxidative damage repair enzymes. (302 aa)    
Predicted Functional Partners:
CVAR_1817
Hypothetical protein; SAM-dependent methyltransferases.
       0.832
CVAR_1819
Hypothetical protein; ABC-type spermidine/putrescine transport systems, ATPase components.
  
    0.826
CVAR_1820
Thioredoxin domain-containing protein.
       0.813
CVAR_2477
Hydrolase; Zn-dependent hydrolases, including glyoxylases.
     0.751
etfA
Electron transfer flavoprotein, alpha subunit.
  
  
 0.608
etfB
Electron transfer flavoprotein, beta subunit.
  
    0.604
CVAR_0135
ferredoxin-NAD+ reductase; Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
 
 0.573
nucS
Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
       0.553
CVAR_1822
Putative secreted protein.
 
     0.546
fadH
NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
 0.509
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.