STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katACatalase; Belongs to the catalase family. (534 aa)    
Predicted Functional Partners:
katG
Catalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
    
 0.934
CVAR_1428
Oxidoreductase; FAD/FMN-containing dehydrogenases.
   
 0.921
CVAR_1429
Oxidoreductase; FAD/FMN-containing dehydrogenases.
   
 0.921
ahpC
Alkyl hydroperoxide reductase; Peroxiredoxin.
  
 
 0.787
sodC
Cu/Zn superoxide dismutase.
 
 0.751
fur
Fur DNA-binding transcription regulator; Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
    
 0.722
sodA1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 0.711
sigC
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.701
fas
Fatty acid synthase; Enoyl reductase domain of yeast-type FAS1.
   
 0.678
CVAR_1232
Hypothetical protein; Acyl dehydratase.
   
 0.676
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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