STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ntrCABC-type sugar transport systems, ATPase components. (264 aa)    
Predicted Functional Partners:
nrtA
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
  
 0.978
ntrB
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
 0.970
CVAR_1661
ABC transport system permease protein.
  
 0.872
tauC
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.870
CVAR_0404
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
 0.861
CVAR_2650
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
 0.808
CVAR_2687
Hypothetical protein.
     
 0.788
CVAR_1662
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
  
 0.646
CVAR_0620
Hypothetical protein; ABC-type sugar transport systems, ATPase components.
 
    
0.604
CVAR_2356
Putative membrane protein; ABC-type sugar transport systems, permease components.
    
 0.595
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.