STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vanBVanillate monooxygenase; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. (332 aa)    
Predicted Functional Partners:
vanA
Vanillate monooxygenase; Phenylpropionate dioxygenase and related ring- hydroxylating dioxygenases, large terminal subunit.
 
  
 0.991
CVAR_2694
Putative membrane protein; Permeases of the major facilitator superfamily.
 
   
 0.957
vanR
Predicted transcriptional regulators.
 
     0.702
CVAR_1986
Pyridoxine 5-phosphate oxidase; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase.
      0.680
CVAR_1023
Hypothetical protein.
 
     0.566
CVAR_1019
Hypothetical protein.
 
     0.521
CVAR_2042
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
  
 0.494
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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