Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CVAR_0341 | CVAR_1097 | CVAR_0341 | CVAR_1097 | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Glutamine synthetase. | 0.821 |
CVAR_0341 | CVAR_1681 | CVAR_0341 | CVAR_1681 | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Putative aminotransferase; Adenosylmethionine-8-amino-7- oxononanoateaminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.928 |
CVAR_0341 | gabT1 | CVAR_0341 | CVAR_0951 | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.928 |
CVAR_0341 | gabT2 | CVAR_0341 | CVAR_2953 | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.928 |
CVAR_0341 | gadB | CVAR_0341 | CVAR_2979 | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Glutamate decarboxylase and related PLP- dependent proteins; Belongs to the group II decarboxylase family. | 0.918 |
CVAR_0341 | glsA | CVAR_0341 | CVAR_1223 | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Glutaminase; Belongs to the glutaminase family. | 0.822 |
CVAR_0341 | gltB | CVAR_0341 | CVAR_2900 | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Glutamate synthase domain 2. | 0.847 |
CVAR_0341 | gltB2 | CVAR_0341 | CVAR_1493 | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Glutamate synthase domain 2. | 0.847 |
CVAR_0341 | panC | CVAR_0341 | CVAR_0492 | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Pantoate-beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.900 |
CVAR_0341 | putA | CVAR_0341 | CVAR_0183 | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | NAD-dependent aldehyde dehydrogenases. | 0.860 |
CVAR_1097 | CVAR_0341 | CVAR_1097 | CVAR_0341 | Glutamine synthetase. | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | 0.821 |
CVAR_1097 | gadB | CVAR_1097 | CVAR_2979 | Glutamine synthetase. | Glutamate decarboxylase and related PLP- dependent proteins; Belongs to the group II decarboxylase family. | 0.915 |
CVAR_1097 | glsA | CVAR_1097 | CVAR_1223 | Glutamine synthetase. | Glutaminase; Belongs to the glutaminase family. | 0.911 |
CVAR_1097 | gltB | CVAR_1097 | CVAR_2900 | Glutamine synthetase. | Glutamate synthase domain 2. | 0.978 |
CVAR_1097 | gltB2 | CVAR_1097 | CVAR_1493 | Glutamine synthetase. | Glutamate synthase domain 2. | 0.978 |
CVAR_1097 | putA | CVAR_1097 | CVAR_0183 | Glutamine synthetase. | NAD-dependent aldehyde dehydrogenases. | 0.927 |
CVAR_1681 | CVAR_0341 | CVAR_1681 | CVAR_0341 | Putative aminotransferase; Adenosylmethionine-8-amino-7- oxononanoateaminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | 0.928 |
CVAR_1681 | gadB | CVAR_1681 | CVAR_2979 | Putative aminotransferase; Adenosylmethionine-8-amino-7- oxononanoateaminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Glutamate decarboxylase and related PLP- dependent proteins; Belongs to the group II decarboxylase family. | 0.935 |
CVAR_1681 | panC | CVAR_1681 | CVAR_0492 | Putative aminotransferase; Adenosylmethionine-8-amino-7- oxononanoateaminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Pantoate-beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.903 |
CVAR_1681 | putA | CVAR_1681 | CVAR_0183 | Putative aminotransferase; Adenosylmethionine-8-amino-7- oxononanoateaminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | NAD-dependent aldehyde dehydrogenases. | 0.456 |
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