STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_3072Hypothetical protein. (217 aa)    
Predicted Functional Partners:
CVAR_0354
Hypothetical protein; Lactoylglutathione lyase and related lyases.
    
 0.904
dld1
D-lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.
    
 0.901
hisS
Histidyl-tRNA synthetase.
  
    0.836
CVAR_1538
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
    0.688
fadH
NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
 0.509
betT1
Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.481
CVAR_0135
ferredoxin-NAD+ reductase; Uncharacterized NAD(FAD)-dependent dehydrogenases.
   
 0.475
pks13
Polyketide synthase modules and related proteins.
   
 
 0.463
betB
NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
  
    0.422
CVAR_0342
Hypothetical protein; Rhodanese-related sulfurtransferase.
  
 
 0.414
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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